Genetics of Dog Breeding

This is an explanation of terms that are used in breeders section of the Pedigree Database.

Ancestor-loss Coefficient

The ancestor loss coefficient is a measurement for the number of different ancestors in both the paternal and the maternal line. It is calculated by dividing the number of different ancestors by the total number of ancestors over X generations. (According to this calculation method the coefficient would have to be called strictly speaking "ancestor variety coefficient", because with its maximum value of 100% the ancestor loss is zero.)

The ALC is only meaningful together with the indication of the number of regarded generations. With increasing number of generations the ALC declines usually very fast. This is caused by the fact that the distance of the ancestors counted is not taken into account.

The advantage of the ALC is that it (with limited precision) permits to estimate the variety of the gene pool of an animal.

In the ALC and IC analysis, common ancestors are marked light blue.

Inbreeding Coefficient

The in-breeding coefficient does not refer to the entire gene pool of an animal. The IC measures the probability that the two existing alleles of any gene (except coincidental mutations) are identical, i.e. they are inherited from the same ancestor. Since equal alleles can be inherited only once over the father and once over the mother, only those ancestors which are represented in the paternal as well as in the maternal line contribute to the IC value.

The computation of the IC also incorporates the distance of the common ancestors from the test subject. This has the consequence that the IC (contrary to the ALC) converges and changes less with increasing number of regarded generations.

This is the formula for the computation of the IC:

Fx=Sigma(a=1...m)((1+Fa)/(2 exp (na,s+na,d+1)))

1...m are the ancestors who are common to maternal and paternal line. na,s and na,d are the distances (in generations) of the common ancestors from the test subject. Theoretically, also the IC of the respective common ancestors should have to be included into the calculation. Since they have only marginal effect on the result, we exclude this component from the calculation, i.e. we assume Fa=0.

In the extreme case of mating brother and sister the IC would rise to the maximum possible value of 0.25 (25%). A special effect of the IC is that it can be brought to zero. If we crossed into an established European breeding line a Briard from the rear angle of the world which is really a Briard but not related to our line for X generations, the IC would become zero.

In the ALC and IC analysis, ancestors who affect the IC are displayed with a dark-blue border.

Hip Dysplasia

During the evaluation for breeding selections many breeders do observe the HD results of the entire litter and the offspring. It is to be noted that inheritance contributes only one part to the development of an HD. Over-use or wrong nutrition in the youth, accidents and other factors are at least as important.

In the HD analysis, different colors are used to mark "HD free", "HD suspicion" etc.